Archaeopteryx (software) explained

Archaeopteryx
Developer:Christian M. Zmasek
Latest Release Version:0.972+ beta 9M
Latest Release Date:2012.08.08
Operating System:Windows, Linux, Mac OS X
Genre:Bioinformatics, phylogenomics
License:LGPL

Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees. This type of program can be used for a variety of analyses of molecular data sets, but is particularly designed for phylogenomics. Besides tree description formats with limited expressiveness (such as Newick/New Hamphshire, Nexus), it also implements the phyloXML[1] format.Archaeopteryx is the successor to Java program A Tree Viewer (ATV).[2]

External links

Notes and References

  1. Han . Mira V. . Zmasek, Christian M. . phyloXML: XML for evolutionary biology and comparative genomics . BMC Bioinformatics . 10 . 2009 . 19860910 . 2774328 . 10.1186/1471-2105-10-356 . 356 . free .
  2. Zmasek . Christian M. . Eddy, Sean R. . ATV: display and manipulation of annotated phylogenetic trees . Bioinformatics . 17 . 4 . 2001 . 11301314 . 10.1093/bioinformatics/17.4.383. 383–384 . free .