Anatomography Explained

Anatomography
Url:lifesciencedb.jp/bp3d
Commercial:No
Language:English or Japanese
Owner:Database Center for Life Science
Author:Kousaku Okubo
Launch Date:2009-02-09
Content License:
CC-BY-SA 2.1-ja[1]
Current Status:Active

Anatomography is an interactive website which supports generating anatomical diagrams and animations of the human body. The Anatomography website is maintained by the DBCLS (Database Center for Life Science) non-profit research institute located at the University of Tokyo. Anatomical diagrams generated by Anatomography, and 3D polygon data used on the website (called BodyParts3D), are freely available under the Creative Commons Attribution-ShareAlike license.[1]

Description

Anatomography was launched on Feb. 9, 2009[2] by founder and chief director, professor of the DNA Data Bank of Japan at the National Institute of Genetics.

Human body polygon data used in the site are called "BodyParts3D".[3] BodyParts3D polygon data are extracted from full-body MRI images. The MRI image set that BodyParts3D is based on is called "TARO". Taro is a common given name for males in Japanese, as John is in English. TARO is a 2mm * 2mm * 2mm voxel dataset of the human male created by the National Institute of Information and Communications Technology.[4] TARO was published freely in November, 2004.[5] [6]

The construction process of BodyParts3D is as follows.[3]

BodyParts3D polygon data are distributed in the OBJ file format. The entire data file's size is 127 MB (polygon reduced) and 521 MB (high quality) as of version 3.0.[8] The number of body parts (organs) registered in BodyParts3D is 1,523 as of version 3.0.[7]

License

Images generated by Anatomography and the polygon data included in BodyParts3D are licensed under the Creative Commons license,[1] in hope of widening usage and democratizing medical knowledge.

Funding

The BodyParts3D/Anatomography project was funded by MEXT (Japanese Ministry of Education, Culture, Sports, Science and Technology) from FY2007 to FY2010.[9] [10] As of FY2011, the project has been funded by the JST (Japan Science and Technology Agency).[10]

Reception

Diagrams from Anatomography are used, for example, in Canadian science TV show Le code Chastenay,[11] Internet encyclopedia Wikipedia, as lecture material in universities, and elsewhere to share knowledge.[12] About usage of Anatomography on websites like Wikipedia and Wikimedia Commons, developers say "spreading of usages by anonymous users on like Wikipedia and Wikimedia Commons is what we had expected."[12]

Technical features

BodyParts3D/Anatomography project uses the Foundational Model of Anatomy (FMA). The FMA is an open-source anatomical ontology developed and maintained by the Structural Informatics Group at the University of Washington. In BodyParts3D, each body-part is managed by an FMA identifier (FMAID) defined by the FMA. For example, the vertebral column is registered as FMA13478, the temporal lobe is registered as FMA61825, and so on.

Version history

Similar services

Others

A few tutorial videos on using Anatomography are available on YouTube,[16] see external links.

See also

External links

Notes and References

  1. http://lifesciencedb.jp/bp3d/info/userGuide/faq/credit.html FAQs - credit.
  2. http://lifesciencedb.jp/bp3d/info/userGuide/releaseNotes/index.html Release notes
  3. 18835852. 2686534. 2009. Mitsuhashi. N. Fujieda. K. Tamura. T. Kawamoto. S. Takagi. T. Okubo. K. BodyParts3D: 3D structure database for anatomical concepts. 37. Database issue. D782–5. 10.1093/nar/gkn613. Nucleic Acids Research.
  4. 14971769. 2004. Nagaoka. T. Watanabe. S. Sakurai. K. Kunieda. E. Watanabe. S. Taki. M. Yamanaka. Y. Development of realistic high-resolution whole-body voxel models of Japanese adult males and females of average height and weight, and application of models to radio-frequency electromagnetic-field dosimetry. 49. 1. 1–15. Physics in Medicine and Biology. 10.1088/0031-9155/49/1/001. 2004PMB....49....1N.
  5. http://www.itmedia.co.jp/news/articles/0411/10/news106.html 日本人の数値人体モデルDB「TARO」と「HANAKO」公開 2004/11/10
  6. http://www2.nict.go.jp/pub/whatsnew/press/h16/041110-2/041110-2.html 報道発表:日本人平均成人男女の数値人体モデルデータベース公開のお知らせ 2004-11-10
  7. ftp://ftp.biosciencedbc.jp/archive/bodyparts3d/LATEST/release_3.0_e.html BodyParts3D Release Note (Release 3.0, 2011/6/20)
  8. http://dbarchive.biosciencedbc.jp/en/bodyparts3d/download.html Download - BodyParts3D
  9. http://dbarchive.biosciencedbc.jp/en/bodyparts3d/desc.html BodyParts3D Database Description
  10. http://dbcls.rois.ac.jp/en/faq FAQ - About the Database Center for Life Science (DBCLS)
  11. http://lecodechastenay.telequebec.tv/emission.aspx?id=54 「LE CODE CHASTENAY」Emission 48
  12. 三橋 信孝、藤枝 香、今井 紫緒、武藤 勇、田村 卓郎、川本 祥子、高木 利久、大久保 公策 「BodyParts3DとAnatomography: 医学での情報共有を「動機付ける」素材」 シンポジウム「ライフサイエンスの未来へ～10年先のデータベースを考える～」/ Nobutaka Mitsuhashi, Kaori Fujieda, Shio Imai, Isamu Muto, Takuro Tamura, Shoko Kawamoto, Toshihisa Takagi and Kousaku Okubo "BodyParts3D and Anatomography: Materials motivating sharing information in medicine" Poster presentation at "Symposium: Toward the Future of Life Science - Thinking Databases of 10 Years Later" held in the University of Tokyo at 2010-10-05. Retrieved 2012-10-12.
  13. http://dbcls.rois.ac.jp/en/archives/163 "BodyParts3D/Anatomography" Updates
  14. ftp://ftp.biosciencedbc.jp/archive/bodyparts3d/20100816/release_2.0_e.html BodyParts3D Release Note (Release 2.0, 2010/4/28)
  15. ftp://ftp.biosciencedbc.jp/archive/bodyparts3d/LATEST/release_4.0_e.html "BodyParts3D Release Notes, v4.0"
  16. 21803786. 3294242. 2012. Kawano. S. Ono. H. Takagi. T. Bono. H. Tutorial videos of bioinformatics resources: Online distribution trial in Japan named TogoTV. 13. 2. 258–68. 10.1093/bib/bbr039. Briefings in Bioinformatics.

This article is licensed under the GNU Free Documentation License. It uses material from the Wikipedia article "Anatomography".

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