| Country: | Estonia |
| Season: | 2016 |
| Division1: | Meistriliiga |
| Champions1: | FC Infonet |
| Division2: | Esiliiga |
| Champions2: | JK Tulevik Viljandi |
| Division3: | Esiliiga B |
| Champions3: | FC Kuressaare |
| Division4: | II Liiga |
| Champions4: | Paide Linnameeskond U21 |
| Division5: | III Liiga |
| Champions5: | Raplamaa JK |
| Division6: | IV Liiga |
| Champions6: | Raasiku FC Joker II |
| Domestic: | Estonian Cup |
| Dchampions: | FC Flora Tallinn |
| Leaguecup: | Small Cup |
| Lchampions: | Tartu FC Merkuur |
| Supercup: | Supercup |
| Schampions: | FC Infonet |
| Prevseason: | 2015 |
| Nextseason: | 2017 |
| Flagicon: | yes |
This page summarizes 2016 in Estonian football.
The home team or the team that is designated as the home team is listed in the left column; the away team is in the right column.
| League | Promoted to league | Relegated from league |
|---|---|---|
| Meistriliiga | ||
| Esiliiga | ||
| Esiliiga B | ||
| II Liiga |
| |
| III Liiga |
|
|
| IV Liiga |
|
|
See main article: 2016 Meistriliiga.
See main article: 2016 Esiliiga.
See main article: 2016 Esiliiga B.
See main article: II Liiga.
See main article: III Liiga.
See main article: IV Liiga.
See main article: 2015–16 Estonian Cup. Home teams listed on top of bracket. (AET): At Extra Time
| Club | Competition | Final round |
|---|---|---|
| Flora | 2016–17 UEFA Champions League | First qualifying round |
| Infonet | 2016–17 UEFA Europa League | First qualifying round |
| Kalju | 2016–17 UEFA Europa League | Third qualifying round |
| Levadia | 2016–17 UEFA Europa League | Second qualifying round |