| Match | Date | Team | Score | Team | Venue | Attendance |
|---|
| 1 | 2016.02.28 | Tokyo Verdy | 1-0 | Hokkaido Consadole Sapporo | Ajinomoto Stadium | 9,272 |
| 2 | 2016.03.06 | Kamatamare Sanuki | 2-1 | Tokyo Verdy | Pikara Stadium | 2,858 |
| 3 | 2016.03.13 | Roasso Kumamoto | 1-0 | Tokyo Verdy | Umakana-Yokana Stadium | 5,902 |
| 4 | 2016.03.20 | Tokyo Verdy | 1-0 | Tokushima Vortis | Ajinomoto Stadium | 3,813 |
| 5 | 2016.03.26 | Tokyo Verdy | 0-1 | FC Machida Zelvia | Ajinomoto Stadium | 5,166 |
| 6 | 2016.04.03 | Fagiano Okayama | 1-1 | Tokyo Verdy | City Light Stadium | 7,184 |
| 7 | 2016.04.10 | Tokyo Verdy | 0-0 | V-Varen Nagasaki | Komazawa Olympic Park Stadium | 2,752 |
| 8 | 2016.04.17 | Yokohama FC | 1-1 | Tokyo Verdy | NHK Spring Mitsuzawa Football Stadium | 3,238 |
| 9 | 2016.04.23 | Tokyo Verdy | 0-3 | Mito HollyHock | Komazawa Olympic Park Stadium | 3,999 |
| 10 | 2016.04.29 | Thespakusatsu Gunma | 2-2 | Tokyo Verdy | Shoda Shoyu Stadium Gunma | 3,234 |
| 11 | 2016.05.03 | Tokyo Verdy | 0-1 | Montedio Yamagata | Ajinomoto Stadium | 5,515 |
| 12 | 2016.05.07 | Tokyo Verdy | 0-4 | Matsumoto Yamaga FC | Ajinomoto Stadium | 8,664 |
| 13 | 2016.05.15 | Zweigen Kanazawa | 1-1 | Tokyo Verdy | Ishikawa Athletics Stadium | 3,902 |
| 14 | 2016.05.22 | Tokyo Verdy | 2-1 | Shimizu S-Pulse | Ajinomoto Stadium | 8,792 |
| 15 | 2016.05.29 | Ehime FC | 0-0 | Tokyo Verdy | Ningineer Stadium | 2,019 |
| 16 | 2016.06.04 | Renofa Yamaguchi FC | 3-1 | Tokyo Verdy | Ishin Memorial Park Stadium | 4,909 |
| 17 | 2016.06.08 | Tokyo Verdy | 1-1 | FC Gifu | Ajinomoto Field Nishigaoka | 3,120 |
| 18 | 2016.06.12 | JEF United Chiba | 2-2 | Tokyo Verdy | Fukuda Denshi Arena | 11,196 |
| 19 | 2016.06.19 | Tokyo Verdy | 2-1 | Kyoto Sanga FC | Ajinomoto Stadium | 4,209 |
| 20 | 2016.06.26 | Cerezo Osaka | 1-0 | Tokyo Verdy | Kincho Stadium | 10,171 |
| 21 | 2016.07.03 | Giravanz Kitakyushu | 2-1 | Tokyo Verdy | Honjo Stadium | 2,864 |
| 22 | 2016.07.10 | Tokyo Verdy | 2-1 | Fagiano Okayama | Ajinomoto Stadium | 4,944 |
| 23 | 2016.07.16 | V-Varen Nagasaki | 2-1 | Tokyo Verdy | Nagasaki Stadium | 4,146 |
| 24 | 2016.07.20 | Shimizu S-Pulse | 0-1 | Tokyo Verdy | IAI Stadium Nihondaira | 7,083 |
| 25 | 2016.07.24 | Tokyo Verdy | 1-2 | Thespakusatsu Gunma | Ajinomoto Stadium | 3,739 |
| 26 | 2016.07.31 | Tokyo Verdy | 1-0 | Roasso Kumamoto | Ajinomoto Stadium | 5,723 |
| 27 | 2016.08.07 | Kyoto Sanga FC | 2-0 | Tokyo Verdy | Kyoto Nishikyogoku Athletic Stadium | 6,030 |
| 28 | 2016.08.11 | Tokyo Verdy | 4-1 | Zweigen Kanazawa | Ajinomoto Stadium | 3,658 |
| 29 | 2016.08.14 | Tokyo Verdy | 0-2 | Yokohama FC | Ajinomoto Stadium | 7,235 |
| 30 | 2016.08.21 | Tokushima Vortis | 3-1 | Tokyo Verdy | Pocarisweat Stadium | 3,618 |
| 31 | 2016.09.11 | Mito HollyHock | 1-1 | Tokyo Verdy | K's denki Stadium Mito | 5,631 |
| 32 | 2016.09.18 | Tokyo Verdy | 3-2 | Kamatamare Sanuki | Ajinomoto Field Nishigaoka | 3,347 |
| 33 | 2016.09.25 | Tokyo Verdy | 1-1 | JEF United Chiba | Ajinomoto Stadium | 6,121 |
| 34 | 2016.10.02 | FC Machida Zelvia | 2-1 | Tokyo Verdy | Machida Stadium | 5,016 |
| 35 | 2016.10.08 | Tokyo Verdy | 1-1 | Giravanz Kitakyushu | Ajinomoto Stadium | 4,057 |
| 36 | 2016.10.16 | Montedio Yamagata | 1-0 | Tokyo Verdy | ND Soft Stadium Yamagata | 5,584 |
| 37 | 2016.10.22 | Hokkaido Consadole Sapporo | 1-2 | Tokyo Verdy | Sapporo Dome | 18,868 |
| 38 | 2016.10.30 | Tokyo Verdy | 1-1 | Ehime FC | Ajinomoto Stadium | 6,931 |
| 39 | 2016.11.03 | Tokyo Verdy | 2-2 | Renofa Yamaguchi FC | Ajinomoto Stadium | 4,054 |
| 40 | 2016.11.06 | Matsumoto Yamaga FC | 2-0 | Tokyo Verdy | Matsumotodaira Park Stadium | 15,343 |
| 41 | 2016.11.12 | Tokyo Verdy | 1-2 | Cerezo Osaka | Ajinomoto Stadium | 8,340 |
| 42 | 2016.11.20 | FC Gifu | 4-2 | Tokyo Verdy | Gifu Nagaragawa Stadium | 12,158 | |
Koichi Togashi