| Champ: |  Yshai Oliel Patrik Rikl |
| Runner: |  Chung Yun-seong Orlando Luz |
| Score: | 6–3, 6–4 |
| Before Name: | French Open – Boys' doubles |
| After Name: | French Open – Boys' doubles |
See main article: 2016 French Open.
Álvaro López San Martín and Jaume Munar were the defending champions, but were no longer eligible to participate.
Yishai Oliel of Israel and Patrik Rikl of the Czech Republic won the title, defeating Chung Yun-seong and Orlando Luz in the final, 6–3, 6–4.[1]