| Club: | SC Paderborn |
| Season: | 2016–17 |
| Manager: | Stefan Emmerling |
| Stadium: | Benteler-Arena |
| League: | 3. Liga |
| League Result: | 18th |
| Cup1: | DFB-Pokal |
| Cup1 Result: | First round |
| Cup2: | Westphalian Cup |
| Cup2 Result: | Winner |
| Pattern La1: | _paderborn1415h |
| Pattern B1: | _paderborn1415h |
| Pattern Ra1: | _paderborn1415h |
| Pattern Sh1: | _paderborn1415h |
| Pattern So1: | _paderborn1415h |
| Leftarm1: | 000000 |
| Body1: | 000000 |
| Rightarm1: | 000000 |
| Shorts1: | 000000 |
| Socks1: | 000000 |
| Pattern La2: | _paderborn1415a |
| Pattern B2: | _paderborn1415a |
| Pattern Ra2: | _paderborn1415a |
| Pattern Sh2: | _paderborn1415a |
| Pattern So2: | _paderborn1415a |
| Leftarm2: | 74170F |
| Body2: | 833936 |
| Rightarm2: | 74170F |
| Shorts2: | F7E900 |
| Socks2: | F7E900 |
| Pattern La3: | _paderborn1415t |
| Pattern B3: | _paderborn1415t |
| Pattern Sh3: | _paderborn1415t |
| Leftarm3: | FFFFFF |
| Body3: | FFFFFF |
| Rightarm3: | FFFFFF |
| Shorts3: | FFFFFF |
| Socks3: | FFFFFF |
| Updated: | 9 March 2017 |
| Prevseason: | 2015–16 |
| Nextseason: | 2017–18 |
The 2016–17 SC Paderborn 07 season is the 110th season in the football club's history. After being relegated from the 2015–16 2. Bundesliga, Paderborn now play in the 3. Liga. They also participated in this season's edition of the domestic cup, the DFB-Pokal. The season covers a period from 1 July 2016 to 30 June 2017.
See main article: article and 2016–17 3. Liga.
See main article: article and 2016–17 DFB-Pokal.