| Club: | Kukësi |
| Season: | 2016–17 |
| Manager: | Ernest Gjoka |
| Chairman: | Safet Gjici |
| Stadium: | Zeqir Ymeri Stadium |
| League: | Kategoria Superiore |
| League Result: | Winners |
| Cup1: | Albanian Cup |
| Cup1 Result: | Quarter-finals |
| Cup2: | Albanian Supercup |
| Cup2 Result: | Winners |
| Cup3: | Europa League |
| Cup3 Result: | Second qualifying round |
| Prevseason: | 2015–16 |
| Nextseason: | 2017–18 |
| Pattern La1: | _kukesih |
| Pattern B1: | _fkkh |
| Pattern Ra1: | _kukesih |
| Pattern Sh1: | _ |
| Leftarm1: | 294D99 |
| Body1: | 294D99 |
| Rightarm1: | 294D99 |
| Shorts1: | 294D99 |
| Socks1: | 294D99 |
| Pattern La2: | _kukesia |
| Pattern B2: | _kukesia |
| Pattern Ra2: | _kukesia |
| Pattern Sh2: | _ |
| Leftarm2: | FFFFFF |
| Body2: | FFFFFF |
| Rightarm2: | FFFFFF |
| Shorts2: | FFFFFF |
| Socks2: | FFFFFF |
This article covers the 2016–17 season for Kukësi. They'll participate in the Kategoria Superiore, Albanian Supercup and the Albanian Cup. The club also started the season in the UEFA Europa League but were eliminated in the second qualifying round by Austrian club Austria Wien.[1]
.[1]
| Date | Pos. | Name | From | Fee |
|---|---|---|---|---|
| 1 July 2016 | MF |  Marko Šćepanović | Mladost Podgorica | Undisclosed [2] |
| 1 July 2016 | DF |  Polizoi Arbëri | Vllaznia Shkodër | Undisclosed [3] |
| 29 July 2016 | GK | Aldo Teqja |  Anorthosis Famagusta | Undisclosed [4] |
| 30 July 2016 | FW | Pero Pejić |  Esteghlal | Undisclosed [5] |
| 2 August 2016 | DF | Entonio Pashaj | Flamurtari Vlorë | Undisclosed [6] |
| 3 August 2016 | MF | Nijaz Lena | Teuta Durrës | Undisclosed [7] |
| Date from | Date to | Pos. | Name | From |
|---|---|---|---|---|
| 9 July 2016 | 21 July 2016 | MF | Liridon Latifi | Skënderbeu Korçë[8] |
| 9 July 2016 | 21 July 2016 | MF | Sabien Lilaj | Skënderbeu Korçë |
| Date | Pos. | Name | To | Fee |
|---|---|---|---|---|
| 1 July 2016 | DF | Denis Peposhi | Korabi Peshkopi | Undisclosed [9] |
| 1 July 2016 | DF | Renato Malota | Partizani Tirana | Undisclosed [10] |
| 5 July 2016 | FW | Ansi Nika | Tirana | Undisclosed [11] |
| 29 July 2016 | FW |  Mateus | Santos | Free [12] |
| 1 August 2016 | MF | Marko Šćepanović | Iskra Danilovgrad | Free [13] [14] |
| 2 August 2016 | MF | Philippe Guimarães | Released | Free [15] |
See main article: article and 2016–17 Kategoria Superiore.
See main article: 2016–17 Albanian Cup.
See main article: 2016 Albanian Supercup.
See main article: article and 2016–17 UEFA Europa League.