| Club: | Puebla F.C. |
| Season: | 2016–17 |
| Chairman: | Jesus Lopez Charagoy |
| Manager: | Ricardo Valiño (sacked Jan 30, 2017) José Cardozo |
| Stadium: | Estadio Cuauhtémoc |
| League: | Apertura 2015 |
| League2: | Clausura 2016 |
| Cup1: | Copa Mexico |
| Cup2: | Copa MX (Clausura) |
| Current: | 2016-16 Puebla F.C. season |
| Prevseason: | 2015–16 |
| Nextseason: | 2017–18 |
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The 2016–17 Puebla season was the club's 70th professional season in Mexico's top-flight football league. The season is split into two tournaments—the Torneo Apertura and the Torneo Clausura—each with identical formats and each contested by the same eighteen teams. The club also played Supercopa MX.
For recent transfers, see List of Mexican football transfers winter 2016–2017.
| width=60 | Position | width=60 | Nation | width=150 | Name | width=100 | Goals scored |
|---|---|---|---|---|---|---|---|
| 1. |   | Matías Alustiza | 8 | ||||
| 2. | Álvaro Navarro | 6 | |||||
| 3. | | Pablo Míguez | 2 | ||||
| 3. | | Christian Bermúdez | 2 | ||||
| 3. | | Édgar Dueñas | 2 | ||||
| 3. | | Alexis Canelo | 2 | ||||
| 4. | Robert Herrera | 1 | |||||
| 4. | | Jerónimo Amione | 1 | ||||
See main article: Apertura 2016 Copa MX.
| width=60 | Position | width=60 | Nation | width=150 | Name | width=100 | Goals scored |
|---|---|---|---|---|---|---|---|
| 1. | | Jerónimo Amione | 2 | ||||
| 2. | | Christian Bermúdez | 1 | ||||
| 2. | | Matías Alustiza | 1 | ||||
| 2. | | Sergio Ceballos | 1 | ||||
| 2. |  | Franco Arizala | 1 |
Puebla's Home Attendance by round, Estadio Cuahutemoc has a sitting capacity of 51,726. |}
| round | Team | Attendance | Percentage | |
|---|---|---|---|---|
| 2 | C.F. Monterrey | 13,338 | 28.13% | |
| 2 | Querétaro F.C. | 10,007 | 21.32% | |
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See main article: Apertura 2017 Copa MX.
Puebla FC was drawn into Group 4 of the 2017 Clausura 2017 Copa MX alongside Club Atlas and Mineros de Zacatecas.
| width=60 | Position | width=60 | Nation | width=150 | Name | width=100 | Goals scored |
|---|---|---|---|---|---|---|---|
| 1. | | Jerónimo Amione | 2 | ||||
| 1. | | Federico González | 2 | ||||
| 1. | Álvaro Navarro | 2 |