The men's 5,000 metres at the 2013 IPC Athletics World Championships was held at the Stade du Rhône from 20–29 July 2013.
| Class | width=200 bgcolor=gold | Gold | width=200 bgcolor=silver | Silver | width=200 bgcolor=CC9966 | Bronze |
| T11 | Odair Santos | Cristian Valenzuela | Nuno Alves | |||
| T12 | El Amin Chentouf | Abderrahim Zhiou | Nacer-Eddine Karfas | |||
| T46 | Samir Nouioua | Alex Peris | Michael Roeger | |||
| T54 | Marcel Hug | Masayuki Higuchi | Richard Colman |