| Mode: | Basketball |
| Year: | 2012–13 |
| Team: | Pepperdine Waves |
| Conference: | West Coast Conference |
| Short Conf: | WCC |
| Record: | 12–18 |
| Conf Record: | 4–12 |
| Hc Year: | 2nd |
| Asst Coach1: | Mark Amaral |
| Asst Coach2: | Bryant Moore |
The 2012–13 Pepperdine Waves men's basketball team represented Pepperdine University during the 2012–13 NCAA Division I men's basketball season. This was head coach Marty Wilson's second full season at Pepperdine. The Waves played their home games at the Firestone Fieldhouse and were members of the West Coast Conference. They finished the season 12–18, 4–12 in WCC play, to finish in a tie for seventh place. They lost in the second round of the WCC tournament to San Diego.
| Name | Number | Pos. | Height | Weight | Year | Hometown | Notes | |
|---|---|---|---|---|---|---|---|---|
| Dane Suttle Jr. | 14 | 210 | Graduated | |||||
| Richard Branning | 11 | 175 | Graduated | |||||
| Don Martin | 33 | 195 | Graduated | |||||
| Corbin Moore | 44 | 235 | Graduated | |||||
| Taylor Darby | 41 | 230 | Graduated; Signed a contract with Bohemios in Uruguay | |||||
| Hector Harold | 21 | 205 | Transferred to Vermont[1] | |||||
| Joshua Lowery | 10 | 195 | Transferred to Grand Canyon[2] | |||||
| Ramon Eaton | 24 | 200 | Transferred to New Mexico JC |
All non-conference home games, and conference home games not picked up by the WCC regional packages, are shown on TV-32 in Malibu, known as Pepperdine TV. They are also shown on pepperdinesports.com at no cost for all fans to enjoy.|-!colspan=9 style="background:#FF6200; color:#0021A5;"| Exhibition |-!colspan=9 style="background:#0021A5; color:#FF6200;"| Non-conference regular season|-!colspan=9 style="background:#0021A5; color:#FF6200;"| WCC regular season|-!colspan=9 style="background:#FF6200; color:#0021A5;"| 2013 West Coast Conference men's basketball tournament