| Competition: | Cypriot Second Division |
| Season: | 2012–13 |
| Winners: | Aris (5th title) |
| League Topscorer: | Stamatis Pantos (16 goals) |
| Matches: | 194 |
| Total Goals: | 534 |
| Prevseason: | 2011–12 |
| Nextseason: | 2013–14 |
The 2012–13 Cypriot Second Division was the 58th season of the Cypriot second-level football league. It began on 15 September 2012[1] and ended on 11 May 2013.[2] The defending champions were Doxa Katokopias. Aris Limassol and AEK Kouklia finished equal on points but Aris Limassol won the championship because they had a better goal difference than AEK Kouklia in the matches played between the two teams.
Teams promoted to 2012–13 Cypriot First Division
Teams relegated from 2011–12 Cypriot First Division
Teams promoted from 2011–12 Cypriot Third Division
Teams relegated to 2012–13 Cypriot Third Division
Including matches played on 11 May 2013; Source: CFA
| Rank | Player | Club | Goals |
|---|---|---|---|
| 1 |  Stamatis Pantos | AEK Kouklia | 16 |
| 2 | Giorgos Kavazis | AEZ Zakakiou | 13 |
 Wender | Aris Limassol | 13 | |
| 4 | Marco Tagbajumi | APEP | 12 |
| Ângelo | AEK Kouklia | 12 | |
| 6 | Demos Demosthenous | Othellos Athienou | 11 |
| Andreas Kyprianou | Aris Limassol | 11 | |
| 8 | Wesllem | Anagennisi Deryneia | 10 |
| Pedro Alves | Aris Limassol | 10 | |
| Hardy Pinto | Omonia Aradippou | 10 | |
| Panagiotis Linardos | AEZ Zakakiou | 10 | |
| Constantinos Mintikkis | Omonia Aradippou | 10 |