| Club: | Atalanta |
| Season: | 2012–13 |
| Manager: | Stefano Colantuono |
| Chairman: | Antonio Percassi |
| Chrtitle: | Chairman |
| League: | Serie A |
| League Result: | 15th |
| Cup1: | Coppa Italia |
| Cup1 Result: | Round of 16 |
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| Prevseason: | 2011–12 |
| Nextseason: | 2013–14 |
The 2012–13 season is Atalanta Bergamasca Calcio's hundred and fifth season in existence and the club's second consecutive season in the top flight of Italian football. The club was punished with a two-point deduction plus a €25,000 fine at the start of the season, due to involvement in the 2011–12 Italian football scandal.
Total spending: €8,500,000
Total gaining: €9,700,000
See main article: 2012–13 Serie A.
|-! colspan="10" style="background:#dcdcdc; text-align:center"| Goalkeepers|-! colspan="10" style="background:#dcdcdc; text-align:center"| Defenders|-! colspan="10" style="background:#dcdcdc; text-align:center"| Midfielders|-! colspan="10" style="background:#dcdcdc; text-align:center"| Forwards|-! colspan="10" style="background:#dcdcdc; text-align:center"| Players transferred out during the season
This includes all competitive matches. The list is sorted by shirt number when total goals are equal.
| width=15 | width=15 | width=15 | width=15 | width=150 | Name | width=80 | Serie A | width=80 | Coppa Italia | width=80 | Total | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 19 | FW |  | Germán Denis | 15 | 0 | 15 | ||||||||
| 2 | 10 | MF |  | Giacomo Bonaventura | 7 | 1 | 8 | ||||||||
| 3 | 91 | FW | | Giuseppe De Luca | 2 | 1 | 3 | ||||||||
| 4 | 2 | DF | | Guglielmo Stendardo | 2 | 0 | 2 | ||||||||
| = | 7 | FW | Marko Livaja | 2 | 0 | 2 | |||||||||
| = | 17 | MF | Carlos Carmona | 2 | 0 | 2 | |||||||||
| = | 18 | MF | | Luigi Giorgi | 2 | 0 | 2 | ||||||||
| = | 21 | MF | | Luca Cigarini | 2 | 0 | 2 | ||||||||
| = | 99 | FW | | Facundo Parra | 0 | 2 | 2 | ||||||||
| 10 | Own Goals | 1 | 0 | 1 | |||||||||||
| = | 11 | MF | | Maxi Moralez | 1 | 0 | 1 | ||||||||
| = | 13 | DF | | Federico Peluso | 1 | 0 | 1 | ||||||||
| = | 28 | DF | | Davide Brivio | 0 | 1 | 1 | ||||||||
| = | 77 | MF | | Cristian Raimondi | 1 | 0 | 1 | ||||||||
| = | 83 | DF | | Cristiano Del Grosso | 1 | 0 | 1 |