| Club: | Inter Baku |
| Season: | 2008–09 |
| Manager: | Valentin Khodukin |
| Mgrtitle: | Manager |
| Chairman: | Jahangir Hajiyev |
| Chrtitle: | President |
| Stadium: | Shafa Stadium |
| League: | Premier League |
| League Result: | 2nd |
| Cup1: | Azerbaijan Cup |
| Cup1 Result: | Runners up vs Qarabag |
| Cup2: | UEFA Champions League |
| Cup2 Result: | Second qualifying round vs Partizan |
| League Topscorer: | Walter Guglielmone (17) |
| Season Topscorer: | Walter Guglielmone (20) |
| Prevseason: | 2007–08 |
| Pattern B2: | _Azerbaiyan11Home |
| Body2: | 0000a0 |
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| Rightarm2: | 0000a0 |
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| Socks2: | 0000a0 |
| Pattern B1: | _Azerbaiyan11Away |
| Body1: | FFFFFF |
| Leftarm1: | FFFFFF |
| Rightarm1: | FFFFFF |
| Shorts1: | FFFFFF |
| Socks1: | FFFFFF |
The Inter Baku 2008–09 season was Inter Baku's eighth Azerbaijan Premier League season, and their third season under manager Valentin Khodukin. They finished 2nd in the league one point behind champions Baku.
In:[1] Out:
In:Out:
See main article: 2008–09 Azerbaijan Premier League.
See main article: 2008–09 Azerbaijan Cup.
See main article: 2008–09 UEFA Champions League and 2008–09 UEFA Champions League qualifying rounds.
|-|colspan="14"|Players who left Baku on loan during the season:|-|colspan="14"|Players who appeared for Baku who left during the season:|}
| width=60 | Place | width=60 | Position | width=60 | Nation | width=60 | Number | width=150 | Name | width=150 | Premier League | width=150 | Azerbaijan Cup | width=150 | UEFA Champions League | width=150 | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | FW | 22 | 17 | 3 | 0 | 20 | |||||||||||
| 2 | MF | 24 | 6 | 0 | 0 | 6 | |||||||||||
| FW |  | 28 | 5 | 1 | 0 | 6 | |||||||||||
| MF | 14 | 2 | 3 | 1 | 6 | ||||||||||||
| 5 | DF |  | 4 | 3 | 2 | 0 | 5 | ||||||||||
| FW |  | 10 | 3 | 2 | 0 | 5 | |||||||||||
| 7 | MF | | 17 | 4 | 0 | 0 | 4 | ||||||||||
| 8 | MF |  | 13 | 2 | 0 | 1 | 3 | ||||||||||
| 9 | MF | | 25 | 2 | 0 | 0 | 2 | ||||||||||
| MF | | Ruhid Yusubov | 2 | 0 | 0 | 2 | |||||||||||
| MF |  | 21 | 1 | 1 | 0 | 2 | |||||||||||
| 12 | DF |  | 5 | 1 | 0 | 0 | 1 | ||||||||||
| DF | | 9 | 1 | 0 | 0 | 1 | |||||||||||
| MF | | 1 | 0 | 0 | 1 | ||||||||||||
| MF |  | 16 | 1 | 0 | 0 | 1 | |||||||||||
| DF | | 15 | 1 | 0 | 0 | 1 | |||||||||||
| MF | 30 | 1 | 0 | 0 | 1 | ||||||||||||
| MF | | 11 | 1 | 0 | 0 | 1 | |||||||||||
| TOTALS | 54 | 12 | 2 | 68 | |||||||||||||