| Runner: |  Marcin Gawron |
| Score: | 6–2, 7–6(7–4) |
| Draw: | 64 (8 / 8) |
| Seeds: | 16 |
| Before Name: | Wimbledon Championships – Boys' singles |
| After Name: | Wimbledon Championships – Boys' singles |
See main article: 2006 Wimbledon Championships.
Jérémy Chardy was the defending champion, but was no longer eligible to compete in the juniors.
Thiemo de Bakker defeated Marcin Gawron in the final, 6–2, 7–6(7–4) to win the boys' singles tennis title at the 2006 Wimbledon Championships.[1]
See also: 1 and 1. Thiemo de Bakker (champion)
See also: 2 and 4. 
Martin Kližan (first round)
See also: 3 and 2. 
Donald Young (third round)
See also: 4 and 3. 
Alexandre Sidorenko (first round)
See also: 5 and 4. 
Nicolas Santos (first round)
See also: 6 and 3. Luka Belić (quarterfinals)
See also: 7 and 2. Petru-Alexandru Luncanu (third round)
See also: 8 and 1. 
Sanam Singh (third round)
See also: 9 and 2. 
Ivan Sergeyev (first round)
See also: 10 and 3. Lee Hsin-han (third round)
See also: 11 and 4. 
Sho Aida (first round)
See also: 12 and 1. 
Artur Chernov (quarterfinals)
See also: 13 and 4. 
Roman Jebavý (first round)
See also: 14 and 3. Jeevan Nedunchezhiyan (first round)
See also: 15 and 2. Robin Roshardt (quarterfinals)
See also: 16 and 1. Daniel Dutra da Silva (second round)