| Year: | 2006 |
| Team: | New Mexico Lobos |
| Conference: | Mountain West Conference |
| Short Conf: | MW |
| Record: | 6–7 |
| Conf Record: | 4–4 |
| Head Coach: | Rocky Long |
| Hc Year: | 9th |
| Off Coach: | Bob Toledo |
| Oc Year: | 1st |
| Def Coach: | Osia Lewis |
| Dc Year: | 4th |
| Off Scheme: | West Coast |
| Def Scheme: | 3–3–5 |
| Stadium: | University Stadium (Capacity: 38,634) |
| Bowl: | New Mexico Bowl |
| Bowl Result: | L 12–20 vs. San Jose State |
The 2006 New Mexico Lobos football team represented the University of New Mexico during the 2006 NCAA Division I FBS football season. New Mexico competed as a member of the Mountain West Conference (MW), and played their home games in the University Stadium. The Lobos were led by ninth-year head coach Rocky Long.