| Competition: | Mongolian National Championship |
| Season: | 2006 |
| Winners: | Khoromkhon |
| Biggest Away Win: | Darkhan 0–5 Khangarid |
| Biggest Home Win: | Khoromkhon 12–0 Khötöl Darkhan 12–0 Khötöl |
| Highest Scoring: | Khoromkhon 12–0 Khötöl Darkhan 12–0 Khötöl |
| Matches: | 32 |
| Total Goals: | 173 |
| Longest Unbeaten: | Khoromkhon – 6 matches |
| Longest Winless: | Khötöl Mazaalai Zamyn-Üüd Selenge Press – 3 matches |
| Prevseason: | 2005 |
| Nextseason: | 2007 |
The 2006 Mongolian National Championship was the thirty-ninth recorded edition of top flight football in Mongolia and the eleventh season of the Mongolian Premier League, which took over as the highest level of competition in the country from the previous Mongolian National Championship.[1] Khoromkhon were champions, their second title, Khasiin Khulguud were runners up, with Khangarid in third place.[2]
The 2006 season consisted of three distinct stage: the first stage consisted of three groups of four teams, with each group playing a single round robin of matches. From this stage, the top two teams in each group in addition to the two third placed teams with the best records advanced to the next set of matches. The second round consisted of two further groups of four teams, with each group again contesting a single round robin of matches. The winners of each group then progressed directly to a single leg final match, whilst the runners up in each group contested a third place play off match.