| Competition: | Missouri Valley Conference |
| Season: | 2006 |
| Winners: | Bradley |
| Continentalcup1: | MVC Tourney Winner |
| Continentalcup1 Qualifiers: | Creighton |
| Continentalcup2: | To NCAA Tournament |
| Continentalcup2 Qualifiers: | Creighton |
| Prevseason: | 2005 |
| Nextseason: | 2007 |
The 2006 Missouri Valley Conference men's soccer season was the 16th season of men's varsity soccer in the conference.
The 2006 Missouri Valley Conference Men's Soccer Tournament was hosted by Bradley and won by Creighton.
See main article: Missouri Valley Conference Men's Soccer Tournament.