| Champ: |  Emiliano Massa  Kei Nishikori |
| Runner: |  Artur Chernov Valery Rudnev |
| Score: | 2–6, 6–1, 6–2 |
| Before Name: | French Open – Boys' doubles |
| After Name: | French Open – Boys' doubles |
See main article: 2006 French Open.
Emiliano Massa and Kei Nishikori won the title, defeating Artur Chernov and Valery Rudnev in the final, 2–6, 6–1, 6–2.
Alexandre Sidorenko (second round)
Jamie Hunt / Donald Young (second round)
Nicolas Santos (quarterfinals)
Roman Jebavý / Hans Podlipnik Castillo (quarterfinals) Kellen Damico / 
Petru-Alexandru Luncanu (second round)
Jeevan Nedunchezhiyan / Sanam Singh (first round)
Jaak Põldma / 
Ivan Sergeyev (second round)