See main article: 2006 FIBA Africa Clubs Champions Cup. The qualifying rounds for the 2006 FIBA Africa Clubs Champions Cup were played in two groups, in Kinshasa and Abidjan, respectively, each group qualifying four teams for the final round, played in Lagos, Nigeria. [1]
| width=15 | width=220 | Group B | width=20 | M | width=20 | W | width=20 | L | width=20 | PF | width=20 | PA | width=30 | Diff | width=20 | P | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | 6 | 6 | 0 | 402 | 349 | +53 | 12 | ||||||||||
| 2. | 6 | 4 | 2 | 411 | 338 | +73 | 10 | ||||||||||
| 3. | 6 | 3 | 3 | 302 | 348 | -46 | 9 | ||||||||||
| 4. | Inter Club | 6 | 3 | 3 | 348 | 322 | +26 | 9 | |||||||||
| 5. | 4 | 0 | 4 | 345 | 368 | -23 | 4 |
| width=15 | width=220 | Group A | width=20 | M | width=20 | W | width=20 | L | width=20 | PF | width=20 | PA | width=30 | Diff | width=20 | P | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | Plateau Peaks | 6 | 5 | 1 | 479 | 301 | +178 | 11 | |||||||||
| 2. | BACK | 6 | 5 | 1 | 381 | 346 | +35 | 11 | |||||||||
| 3. |  Africa Sports | 6 | 4 | 2 | 304 | 312 | -8 | 10 | |||||||||
| 4. | Zenith BC | 6 | 3 | 3 | 348 | 322 | +26 | 9 | |||||||||
| 5. |  ASPAC | 5 | 2 | 3 | 303 | 354 | −51 | 7 | |||||||||
| 6. | Ebun Comets | 5 | 2 | 3 | 301 | 360 | −59 | 7 | |||||||||
| 7. |  CEPS Braves | 5 | 1 | 4 | 301 | 360 | −59 | 6 | |||||||||
| 8. | CBS | 5 | 1 | 4 | 301 | 360 | −59 | 6 | |||||||||
| 9. |  NPA Pythons | 4 | 1 | 3 | 301 | 360 | −59 | 5 | |||||||||
| 10. | Invincible Eleven | 4 | 0 | 4 | 301 | 360 | −59 | 4 |