The men's pole vault event at the 2006 African Championships in Athletics was held at the Stade Germain Comarmond on August 12.
| Rank | Name | Nationality | 4.20 | 4.40 | 4.60 | 4.70 | 4.80 | 4.90 | 5.00 | 5.05 | 5.15 | 5.20 | 5.50 | Result | Notes | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| – | – | – | – | – | – | – | – | – | xo | xxx | 5.20 | |||||
| – | – | – | o | – | xo | xo | – | xo | xxx | 5.15 | ||||||
| – | – | – | – | o | – | xxx | 4.80 | |||||||||
| – | – | – | – | o | – | x– | xx | 4.80 | ||||||||
| 5 | o | xxx | 4.20 | |||||||||||||
| – | – | xxx |