The men's 10,000 metres event at the 2006 African Championships in Athletics was held at the Stade Germain Comarmond on August 13.
| Rank | Name | Nationality | Time | Notes | |
|---|---|---|---|---|---|
| 28:03.46 | |||||
| 28:03.70 | |||||
| 28:05.07 | |||||
| 28:10.83 | |||||
| 28:15.16 | |||||
| 28:19.88 | |||||
| 28:24.57 | |||||
| 28:29.24 | |||||
| 28:36.07 | |||||
| 10 | 29:10.58 | ||||
| 11 | 29:50.99 | ||||
| 12 | 30:02.65 | ||||
| 13 | 30:04.66 | ||||
| 14 | 30:44.16 | ||||
| 15 | 31:02.78 | ||||
| 16 | 32:11.88 | ||||