| Club: | Al Ain |
| Season: | 2006–07 |
| Chrtitle: | President |
| Manager: | Anghel Iordănescu Tiny Ruys |
| League: | UAE Football League |
| League Result: | 9th |
| Cup1: | President's Cup |
| Cup2: | Federation Cup |
| Cup3 Result: | 2007 Group stage |
| League Topscorer: | Hawar Mulla Nenad Jestrović (4) |
| Season Topscorer: | Nenad Jestrović (9) |
| Updated: | 27 May 2007 |
| Prevseason: | 2005–06 |
| Nextseason: | 2007–08 |
The 2006–07 season was Al Ain Football Club's 39th season in existence and the club's 32nd consecutive season in the top-level football league in the UAE.
See main article: 2006–07 UAE Football League.
See main article: 2007 AFC Champions League.
Includes all competitive matches. The list is sorted alphabetically by surname when total goals are equal.
| Pos. | Player | Football League | President's Cup | Federation Cup | 2006 ACL | 2007 ACL | Total | |
|---|---|---|---|---|---|---|---|---|
| 1 | FW | 4 | 4 | 0 | 1 | 0 | 9 | |
| 2 | MF | 4 | 1 | 0 | 0 | 1 | 6 | |
| 3 | FW | 2 | 1 | 1 | 1 | 0 | 5 | |
| 4 | MF | 2 | 1 | 0 | 0 | 1 | 4 | |
| FW | 2 | 2 | 0 | 0 | 0 | 4 | ||
| 6 | MF | 3 | 0 | 0 | 0 | 0 | 3 | |
| MF | 0 | 1 | 1 | 0 | 1 | 3 | ||
| 8 | MF | 1 | 0 | 0 | 0 | 1 | 2 | |
| DF | 1 | 0 | 0 | 0 | 1 | 2 | ||
| 10 | MF | 0 | 0 | 1 | 0 | 0 | 1 | |
| FW | 1 | 0 | 0 | 0 | 0 | 1 | ||
| MF | 0 | 0 | 1 | 0 | 0 | 1 | ||
| FW | 1 | 0 | 0 | 0 | 0 | 1 | ||
| Own goals (from the opponents) | 1 | 0 | 0 | 0 | 0 | 1 | ||
| Totals | 22 | 10 | 4 | 2 | 5 | 43 |