| Competition: | Meistriliiga |
| Season: | 2001 |
| Winners: | Flora (5th title) |
| League Topscorer: | Maksim Gruznov (37) |
| Prevseason: | 2000 |
| Nextseason: | 2002 |
The 2001 Meistriliiga was the 11th season of the Meistriliiga, Estonia's premier football league. Flora won their fifth title.
2–2 on aggregate. Lootus won on away goals and retained their Meistriliiga spot for the 2002 season.
Each team played every opponent four times, twice at home and twice on the road, for a total of 36 games.
| Rank | Player | Club | Goals[1] |
|---|---|---|---|
| 1 |  Maksim Gruznov | Narva Trans | 37 |
| 2 | Andrei Krõlov | TVMK | 23 |
| 3 | Toomas Krõm | Levadia | 20 |
| 4 | Dmitri Ustritski | Tulevik | 16 |
| 5 | Aleksandr Kulik | Flora | 14 |
| Vladimir Tšelnokov | Levadia | ||
| 7 | Anatoli Novožilov | TVMK | 13 |
| Indrek Zelinski | Flora | ||
| 9 | Oleg Gorjatšov | Narva Trans | 12 |
| 10 |  Dmitri Lipartov | Narva Trans | 9 |
| Aleksandr Tarassenkov | Flora |