| Competition: | Uganda Super League |
| Season: | 1999 |
| Winners: | SC Villa |
| League Topscorer: | Andrew Mukasa, SC Villa (45) |
| Prevseason: | 1998 |
| Nextseason: | 2000 |
The 1999 Ugandan Super League was the 32nd season of the official Ugandan football championship, the top-level football league of Uganda.
The 1999 Uganda Super League was contested by 20 teams and was won by SC Villa, while Maji, UNNATO FC, Posta, Pamba, Rwampara FC, Roraima FC, Gulu United FC and Rockstars were relegated.
The top goalscorer in the 1999 season was Andrew Mukasa of SC Villa with 45 goals. 'Fimbo' holds the record for the greatest number of league goals scored in a single season.[1]