| Year: | 1999 |
| Conference: | Southeastern Conference |
| Shortconference: | SEC |
| Division: | I |
| Teams: | 8 |
| Format: | Two pools of four-team double elimination |
| Ballpark: | Hoover Metropolitan Stadium |
| City: | Hoover, Alabama |
| Champions: | Alabama |
| Titlecount: | 5th |
| Coach: | Jim Wells |
| Coachcount: | 4th |
| Mvp: | G.W. Keller |
| Mvpteam: | Alabama |
| Attendance: | 98,873 |
The 1999 Southeastern Conference baseball tournament was held at Hoover Metropolitan Stadium in Hoover, Alabama from May 19 through 23. Alabama defeated in the championship game, earning the Southeastern Conference's automatic bid to the 1999 NCAA Division I baseball tournament.
The top four teams (based on conference results) from both the Eastern and Western divisions earned invites to the tournament.
Most valuable playerG.W. Keller, Alabama
| Position | Player | School | |
|---|---|---|---|
| 1B | Jeremy Brown | Alabama | |
| 2B | Mark Burnett | Arkansas | |
| 3B | Rodney Nye | Arkansas | |
| SS | Joe Jester | Arkansas | |
| C | Kelley Gulledge | Alabama | |
| OF | Mailon Kent | Auburn | |
| OF | G.W. Keller | Alabama | |
| OF | Jamie Rock | Mississippi State | |
| DH | Travis Chapman | Mississippi State | |
| P | Tanner Brock | Mississippi State | |
| P | Dan McShea | Ole Miss | |
| MVP | G.W. Keller | Alabama |