| Year: | 1999 |
| Team: | Georgia Southern Eagles |
| Sport: | football |
| Conference: | Southern Conference |
| Short Conf: | SoCon |
| Tsnrank: | 1 |
| Record: | 13–2 |
| Conf Record: | 7–1 |
| Head Coach: | Paul Johnson |
| Hc Year: | 3rd |
| Off Coach: | Mike Sewak |
| Oc Year: | 3rd |
| Def Coach: | Rusty Russell |
| Dc Year: | 3rd |
| Stadium: | Paulson Stadium |
| Champion: | NCAA Division I-AA champion SoCon champion |
| Bowl: | NCAA Division I-AA Championship Game |
| Bowl Result: | W 59–24 vs. Youngstown State |
The 1999 Georgia Southern Eagles football team represented Georgia Southern University as a member of the Southern Conference (SoCon) during the 1999 NCAA Division I-AA football season. Led by third-year head coach Paul Johnson, the Eagles compiled an overall record of 13–2 with a conference mark of 7–1, winning the SoCon title. Georgia Southern defeated Youngstown State in the 1999 NCAA Division I-AA Football Championship Game to win the program's fifth NCAA Division I-AA title. The Eagles played their home games at Paulson Stadium in Statesboro, Georgia.