See main article: 1999 Citrix Tennis Championships.
Grant Stafford and Kevin Ullyett were the defending champions, but did not participate this year.
Max Mirnyi and Nenad Zimonjić won in the final 7–6, 3–6, 6–3, against Doug Flach and Brian MacPhie.
Patrick Galbraith / Justin Gimelstob (quarterfinals)
Nicklas Kulti / Mikael Tillström (quarterfinals)
Sébastien Lareau / 
David Roditi (first round) Brandon Coupe / Mark Merklein (quarterfinals)