| Club: | VfL Wolfsburg |
| Season: | 1999–2000 |
| Manager: | Wolfgang Wolf |
| Mgrtitle: | Manager |
| Stadium: | Volkswagen Arena |
| League: | Bundesliga |
| League Result: | 7th |
| Cup1: | DFB-Pokal |
| Cup1 Result: | Round of 16 |
| Cup2: | UEFA Cup |
| Cup2 Result: | Third round |
| League Topscorer: | Jonathan Akpoborie (12) |
| Prevseason: | 1998–99 |
| Nextseason: | 2000–01 |
VfL Wolfsburg finished one place lower than the last season, but still qualified for European competition via the Intertoto Cup.
Squad at end of season[1]
Wolfsburg won 1–0 on aggregate.
Atlético Madrid won 5–3 on aggregate.