| Club: | Sarajevo |
| Season: | 1999–2000 |
| Chairman: | Muhamed Granov Besim Mehmedić |
| Mgrtitle: | Manager |
| Manager: | Agim Nikolić Denijal Pirić |
| Stadium: | Koševo City Stadium |
| League: | Premier League BiH |
| League Result: | 3rd |
| Cup1: | Cup of BiH |
| Cup1 Result: | Round of 16 |
| Cup2: | Supercup of BiH |
| Cup2 Result: | Runners-up |
| League Topscorer: | Amar Ferhatović (13) |
| Season Topscorer: | Amar Ferhatović (13) |
| Highest Attendance: | 30,000 vs Željezničar (6 May 2000) |
| Lowest Attendance: | 800 vs Gradina (14 November 1999) |
| Average Attendance: | 5,572 |
| Largest Win: | Rudar Kakanj 1–7 Sarajevo (11 June 2000) |
| Largest Loss: | Bosna Visoko 4–0 Sarajevo (11 September 1999) |
| Prevseason: | 1998–99 |
| Nextseason: | 2000–01 |
The 1999–2000 Sarajevo season was the club's 51nd season in history, and their 6th consecutive season in the top flight of Bosnian football, the Premier League of BiH. Besides competing in the Premier League, the team competed in the National Cup and National Supercup.
See main article: 1999–2000 First League of Bosnia and Herzegovina.
See main article: 1999–2000 Bosnia and Herzegovina Football Cup.
See main article: Supercup of Bosnia and Herzegovina.