| Copa El Salvador | |
| Year: | 1999-2000 |
| Num Teams: | 36 |
| Winners: | Águila |
| Second: | Firpo |
| Prev Season: | 1998-1999 |
| Next Season: | 2005–06 |
The Copa Presidente 1999–2000 is the first staging of the Copa El Salvador football tournament.
The nine group winners and the three best runners-up from the group stage qualify for the final stage.
The three group winners and the best runners-up from the quarterfinals group stage qualify for the semi-final http://archivo.elsalvador.com/noticias/EDICIONESANTERIORES/2000/MAYO/mayo10/DEPORTES/depor1.html.