| Competition: | Liga Nacional |
| Season: | 1998-99 |
| Winners: | Olimpia (14th title) |
| Runners-Up: | Real España |
| Relegated: | Real Maya |
| Continentalcup1: | CONCACAF Champions Cup |
| Continentalcup1 Qualifiers: | Olimpia Real España |
| Continentalcup2: | UNCAF Interclub Cup |
| Continentalcup2 Qualifiers: | Olimpia Real España |
| League Topscorer: | Sergio Machado (11) |
| Prevseason: | 1997–98 |
| Nextseason: | 1999–2000 |
Although the tournament was played from January to July 1999, this is officially known as the 1998–99 season in the Honduran football league, it was also the last non-Apertura-Clausura format season played. Club Deportivo Olimpia conquered its 14th title in its history.[1]
As of 12 May 1999
Sergio Machado (Platense) with 11 goals| Broncos | |||
|---|---|---|---|
| Gustavo Gallegos | Marcelo Ferreira Martins | Marlon Javier Monge | |
| Martín Castro | Marco Vinicio "Chacal" Ortega | José Ulloa Villatoro | |
| Marathón | |||
| Josué Reyes | Pedro Cubillo | Juan Pablo Centeno | |
| Pompilio Cacho Valerio | Frank García | Walter "Gualala" Trejo | |
| Darwin Pacheco |  Damián Garófalo |  Norman "Tilimán" Núñez | |
| Edwin Alexander Medina | Behiker Bustillo | Jaime Rosales | |
| Mauricio Sabillón | |||
| Motagua | |||
| Hugo Caballero | Noel Valladares | Mario Iván Guerrero Ramírez | |
| Amado "Lobo" Guevara | Milton "Jocón" Reyes | Hernaín Arzú | |
| Reynaldo Clavasquín | José Francisco Ramírez | Mario Chirinos | |
| Óscar Lagos |  Joseph Katongo | Carlos Muñoz | |
| Juan Carlos Raudales | Ninrrol Medina | Juan Manuel "Gato" Coello | |
| Ramón Romero | Jairo "Kikí" Martínez | German "Ñato" Rodríguez | |
| Carlos Salinas | Ovidio Guevara | Gustavo Fuentes | |
| Robel Bernárdez |  Abdul Thompson | ||
| Olimpia | |||
| Carlos Enrique Prono | Héctor Medina | Nahúm Alberto Espinoza Zerón | |
| Denilson Costa de Oliveira | Wilmer Neal "Matador" Velásquez | Gregorio Serrano | |
| Fabio Ulloa | Jorge Samuel Caballero | Oscar David Suazo Velásquez | |
| Christian Santamaría | Merlyn Membreño | Alex Pineda Chacón | |
| Rudy Alberto Williams | Troy Anderson | César Henríquez | |
| Alejandro Kenig | César Colón | Marlon "Pitufo" Hernández | |
| Enrique Reneau | Rodinei Martins | ||
| Platense | |||
| Marcio Machado de Lima | Marco Antonio Mejía | José Luis "Runga" Piota | |
 Ricardo James | Jorge Arita Neal | Antony Torres | |
| Limber Pérez | Rony Morales | Hernan Centeno Bátiz | |
| Julio Cesar "Rambo" D. Leon | Gustavo Fuentes | Juan Manuel Carcamo | |
| Franklin Zambrano | Carlos Dasilva | ||
| Real Maya | |||
| Nelson Rolando Rosales | Jorge Ernesto Pineda | Marvin Fonseca | |
| Luis Lagos | Horacio Aquino | Nigel Zúniga | |
| Guillermo Ramírez | Noel Flores | Leonardo Svagher | |
| Jorge Reyes | Lenín Suárez |  Andrés Vallecilla | |
| David Quezada | Víctor Zúniga | Víctor Carrasco | |
| Real España | |||
| Wilmer Enrique "Supermán" Cruz | Luis Enrique "Gavilán" Cálix | David Cárcamo | |
| César Clother | Ricky Denis García | Orbin "Pato" Cabrera | |
| Alex Roberto Bailey | Edgar Rolando Delgado Guevara | José Francisco Suazo | |
| Washington Leonardo "Piojo" Hernández | Javier Rodríguez | Mario "Pescado" Rodríguez | |
| Héctor Gutiérrez | Francis Reyes | Luis "Bombero" Ramírez | |
| Miguel Angel "Gallo" Mariano | Jorge Humberto Zapata | Milton "Chocolate" Flores | |
| Roberto Brown | Alberto Zapata | ||
| Universidad | |||
| Guillermo César Sumich | |||
| Victoria | |||
| Renán Cristino Bengoché | Fabricio Pérez | Francisco Antonio Pavón | |
| Mauricio Edgardo Figueroa | |||
| Vida | |||
| Geovany Arzú | Carlos Alvarado | René Arturo David "Pupa" Martínez | |
| Marvin Brown James | Carlos Güity | Jorge Arnaldo Ocampo | |
| José Luis Batiz | Diego de Rosa | Juan José Bonifacio | |
| Álvaro Roberto Izquierdo | Clayd Lester Marson | Renán "Chimbo" Aguilera Contreras | |
| Ariel Pérez | José Antonio García | Walter Argueta | |
| Geovany "Venado" Castro | Rigoberto Marinho Echenique | ||