| Competition: | Midland Football Alliance |
| Season: | 1998–99 |
| Winners: | Rocester |
| Promoted: | Rocester |
| Matches: | 380 |
| Total Goals: | 1104 |
| Prevseason: | 1997–98 |
| Nextseason: | 1999–2000 |
The 1998–99 Midland Football Alliance season was the fifth in the history of Midland Football Alliance, a football competition in England.
The league featured 19 clubs from the previous season, along with one new club: