| Year: | 1906 |
| Team: | Mercer Baptists |
| Sport: | football |
| Conference: | Southern Intercollegiate Athletic Association |
| Short Conf: | SIAA |
| Record: | 1–4 |
| Conf Record: | 0–2 |
| Head Coach: | E. E. Tarr |
| Hc Year: | 1st |
| Stadium: | Central City Park |
| Prev Year: | 1903 |
The 1906 Mercer Baptists football team represented Mercer University in the 1906 Southern Intercollegiate Athletic Association football season. Led by E. E. Tarr in his first and only season as head coach, Mercer compiled san overall record of 1–4 with a mark of 0–2 in SIAA play.